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Beauchamp
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Beauchamp Lab wiki
Publications
Resources
THIS SITE IS NO LONGER ACTIVELY MAINTAINED
for the current version, visit:
Beauchamp Lab website at the University of Pennsylvania
Some items that may be helpful:
PDFs of all Beauchamp Lab publications
Resources, include stimuli and code from publications
Older version of lab notebook links, newer version below
Click here for the Research Division of the Department of Neurosurgery at the University of Pennsylvania
To search for things on the wiki, use Google's site search feature. For instance, to find an Experiment Sheet, type
site:openwetware.org/wiki/Beauchamp ExperimentSheet
Notes for Beauchamp Lab members
there is an instructions manual for new lab members in at
Private lab information has migrated to the LabArchives Electronic Research Notebook
Visit this website to create an account
When you create your LabArchives account, make sure to use your PennKey@upenn.edu email address, NOT your FirstName.LastName@pennmedicine.upenn.edu address
Penn uses a 26 digit number for funding sources that is broken into segments that mean something. More info about the setup is available here -
Your CNAC will usually be 400 (School of Medicine, org 4504 (Neurosurgery), prog 2810 (Neuroscience) and cref 4919 (Beauchamp). The BC (budget check) depends on the kind of funding and the funding is a 6 digit assigned to the grant, gift, endowment, or department fund.
Richards 6A Brother MFC (printer)
On Mac OSX, go to Settings/Printers. Click the "+" button to add a printer, click on the globe icon (for web/IP) and enter the IP address, currently
10.103.203.8
AirPrint protocol (default) is fine.
iEEG/ECoG and Related Notes
Download iEEG data from ieeg.org (UPENN data)
Reconstruction and Electrode Labeling (UPenn)
iEEG at UPENN-NATUS Workflow
iEEG at BCM-EMU Workflow
Beauchamp:Electrode Localization and Naming
Electrophysiology Protocols
Analyzing ECoG data (by Adam Burch)
Creating a Surface Model and Electrode Localization (by Muge Ozker Sertel)
Clinical Workflow
Electrode Localization using iELVis
Electrode Localization using steps from the ALICE package
Electrode Localization using steps from the img_pipe package
Analyzing ECoG data (by Muge Ozker Sertel)
Making Activity Maps
Making Resting State Correlation Maps
Using Tobii Eye Tracking Glasses
RAVE Notes
Visit the RAVE website for the most up-to-date information on RAVE
RAVE Pre-Processing Pipeline at UPenn (by Aayushi Sangani)
Noisy Speech Project Experiment Notes
Word Stimuli
Transcribe behavioral responses
Instructions for EMU Patients_SOP
MATLAB set up_SOP
Cross Modal Task
Instructions for EMU Patients_SOP (by Aayushi Sangani)
Psychophysics and Stimulus Creation
G Power 3 is a useful program for power analysis
New Auditory Tactile Experiment
d' (d-prime) Analysis
Race Model Analysis
Stimuli for 100 Hue Experiment
Causal Inference model for Synchrony Perception
Predicting McGurk Fusion Rates
Effect of Video Playback Rate on McGurk Fusion Rates
Video Stimulus Creation in Premiere
fMRI Experimental Design and Analysis
How To Install AFNI
Overview of MRI Experiments
Information for Subjects and Experimenters, such as Human Subjects Training
How to Collect MRI Data and Use the Scanner
Getting raw data from the scanner
Turning the raw data into AFNI BRIKs
Cortical Surface models overview
Using the HCP Atlas Area Labels from Glasser et al. in AFNI/SUMA
Creating Random Stimulus Orderings For Rapid Event-Related Designs
Motion and Distortion Correction
Resting State Analysis
Creating Volume Average Datasets with AFNI
MVPA Notes
RealTimefMRI
Group Analysis with Unequal Group Sizes using GroupAna.m
HiResolution fMRI
ROI Analysis
Drawing ROIs on the cortical surface with SUMA
Automating AFNI and SUMA
Finding Release Burst Duration
Unwarping EPI data
MRI: DTI Analysis
Processing Diffusion Tensor Imaging Data
Automatic VOI Initialization for Interactive Tractography
Deterministic Tractography Constrained by Image Masks
Using TORTOISE
Some approaches for correcting DTI Vibration Artifacts
TMS/TMS+MRI
Overview of an MRI/fMRI guided TMS Experiment
Notes on TMS
NIRS
Eswen Fava's NIRS Manual
Archival Wiki Pages
Old Teaching Notes
Positions
People/Projects/Media
Lab Notebook
Misc. Experiment Notes
Link to AFNI/SUMA documentation
McGurk Stimuli
Word Localizer Stimuli
Autism Data
SR EyeLink Eye Tracker Setup
OLD ASL Eye Tracker Setup
Retinotopic Mapping
AFNI Atlas Values
Tactile Experiment Notes
Notes on analyzing MRI data (old)
ANOVAs in MATLAB
HNL Projector Settings
Notes on Stimulus Projector and Screen in UT Philips Scanner
Auditory-only stimuli
How to 3D Print Brains
RHOPLS for ECoG Data
How to make pretty images for participants
Screencasts of Repeating McGurk Experiments
Some initial pCASL processing notes using BASIL
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This page was last edited on 24 April 2026, at 21:02.
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