Bioconductor - AHWikipathwaysDbs
Bioconductor 3.22
Annotation Packages
AHWikipathwaysDbs
AHWikipathwaysDbs
This is the
released
version of AHWikipathwaysDbs; for the devel version, see
AHWikipathwaysDbs
Metabolites linked to WikiPathways pathways (for AnnotationHub)
DOI:
10.18129/B9.bioc.AHWikipathwaysDbs
Bioconductor version:
Release (3.22)
The package provides a comprehensive mapping table of metabolites linked to Wikipathways pathways. The tables include HMDB, KEGG, ChEBI, Drugbank, PubChem compound, ChemSpider, KNApSAcK, and Wikidata IDs plus CAS and InChIKey. The tables are provided for each of the 25 species ("Anopheles gambiae", "Arabidopsis thaliana", "Bacillus subtilis", "Bos taurus", "Caenorhabditis elegans", "Canis familiaris", "Danio rerio", "Drosophila melanogaster", "Equus caballus", "Escherichia coli", "Gallus gallus", "Gibberella zeae", "Homo sapiens", "Hordeum vulgare", "Mus musculus", "Mycobacterium tuberculosis", "Oryza sativa", "Pan troglodytes", "Plasmodium falciparum", "Populus trichocarpa", "Rattus norvegicus", "Saccharomyces cerevisiae", "Solanum lycopersicum", "Sus scrofa", "Zea mays"). These table information can be used for Metabolite Set Enrichment Analysis.
Author:
Kozo Nishida [aut, cre]
ORCID: 0000-0001-8501-7319
Maintainer:
Kozo Nishida
Citation (from within R, enter
citation("AHWikipathwaysDbs")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AHWikipathwaysDbs")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AHWikipathwaysDbs")
Provide WikipathwaysDb databases for AnnotationHub
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Reference Manual
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NEWS
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Details
biocViews
AnnotationData
AnnotationHub
CustomDBSchema
FunctionalAnnotation
Version
0.99.4
License
Artistic-2.0
Depends
R (>= 4.1.0)
Imports
AnnotationHub
(>= 2.23.0)
System Requirements
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Source Package
AHWikipathwaysDbs_0.99.4.tar.gz
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