This is the released version of BiocBook; for the devel version, see BiocBook.
Write, containerize, publish and version Quarto books with Bioconductor
Bioconductor version: Release (3.22)
A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
citation("BiocBook")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocBook")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocBook")
Details
| biocViews | Infrastructure, ReportWriting, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (2.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.3) |
| Imports | BiocGenerics, pak, cli, glue, gert, gh, gitcreds, httr, usethis, dplyr, purrr, tibble, methods, rprojroot, stringr, yaml, tools, utils, rlang, quarto, renv |
| System Requirements | |
| URL | https://bioconductor.org/packages/BiocBook |
| Bug Reports | https://github.com/js2264/BiocBook/issues |
See More
Package Archives
Follow Installation instructions to use this package in your R session.