This is the released version of countsimQC; for the devel version, see countsimQC.
Compare Characteristic Features of Count Data Sets
Bioconductor version: Release (3.22)
countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.
Author: Charlotte Soneson [aut, cre]
ORCID: 0000-0003-3833-2169
Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>
citation("countsimQC")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("countsimQC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("countsimQC")
Details
| biocViews | ExperimentalDesign, ImmunoOncology, Microbiome, QualityControl, RNASeq, ReportWriting, SingleCell, Software, Visualization |
| Version | 1.28.1 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.5) |
| Imports | rmarkdown (>= 2.5), edgeR, DESeq2(>= 1.16.0), dplyr, tidyr, ggplot2, grDevices, tools, SummarizedExperiment, genefilter, DT, GenomeInfoDbData, caTools, randtests, stats, utils, methods, ragg, rlang |
| System Requirements | |
| URL | https://github.com/csoneson/countsimQC |
| Bug Reports | https://github.com/csoneson/countsimQC/issues |
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Package Archives
Follow Installation instructions to use this package in your R session.