epistasisGA

This is the released version of epistasisGA; for the devel version, see epistasisGA.

An R package to identify multi-snp effects in nuclear family studies using the GADGETS method

Bioconductor version: Release (3.22)

This package runs the GADGETS method to identify epistatic effects in nuclear family studies. It also provides functions for permutation-based inference and graphical visualization of the results.

Author: Michael Nodzenski [aut, cre], Juno Krahn [ctb]

Maintainer: Michael Nodzenski <michael.nodzenski at gmail.com>

Citation (from within R, enter citation("epistasisGA")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epistasisGA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epistasisGA")

Details

biocViews	GeneticVariability, Genetics, SNP, Software
Version	1.12.0
In Bioconductor since	BioC 3.16 (R-4.2) (3.5 years)
License	GPL-3
Depends	R (>= 4.2)
Imports	BiocParallel, data.table, matrixStats, stats, survival, igraph, batchtools, qgraph, grDevices, parallel, ggplot2, grid, bigmemory, graphics, utils
System Requirements
URL	https://github.com/mnodzenski/epistasisGA
Bug Reports	https://github.com/mnodzenski/epistasisGA/issues

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