M3C

This is the released version of M3C; for the devel version, see M3C.

Monte Carlo Reference-based Consensus Clustering

Bioconductor version: Release (3.22)

M3C is a consensus clustering algorithm that uses a Monte Carlo simulation to eliminate overestimation of K and can reject the null hypothesis K=1.

Author: Christopher John, David Watson

Maintainer: Christopher John <chris.r.john86 at gmail.com>

Citation (from within R, enter citation("M3C")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("M3C")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("M3C")

biocViews	Clustering, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version	1.32.0
In Bioconductor since	BioC 3.6 (R-3.4) (8.5 years)
License	AGPL-3
Depends	R (>= 3.5.0)
Imports	ggplot2, Matrix, doSNOW, cluster, parallel, foreach, doParallel, matrixcalc, Rtsne, corpcor, umap
System Requirements
URL

Follow Installation instructions to use this package in your R session.