methylCC

This is the released version of methylCC; for the devel version, see methylCC.

Estimate the cell composition of whole blood in DNA methylation samples

Bioconductor version: Release (3.22)

A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).

Author: Stephanie C. Hicks [aut, cre] ORCID: 0000-0002-7858-0231 , Rafael Irizarry [aut] ORCID: 0000-0002-3944-4309

Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("methylCC")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methylCC")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylCC")

biocViews	DNAMethylation, MethylSeq, MethylationArray, Microarray, Sequencing, Software, WholeGenome
Version	1.24.1
In Bioconductor since	BioC 3.10 (R-3.6) (6.5 years)
License	GPL-3
Depends	R (>= 3.6), FlowSorted.Blood.450k
Imports	Biobase, GenomicRanges, IRanges, S4Vectors, dplyr, magrittr, minfi, bsseq, quadprog, stats, utils, bumphunter, genefilter, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19
System Requirements
URL	https://github.com/stephaniehicks/methylCC/
Bug Reports	https://github.com/stephaniehicks/methylCC/

Follow Installation instructions to use this package in your R session.