Bioconductor - singscore

Bioconductor - singscore
Bioconductor 3.22
Software Packages
singscore
singscore
This is the
released
version of singscore; for the devel version, see
singscore
Rank-based single-sample gene set scoring method
DOI:
10.18129/B9.bioc.singscore
Bioconductor version:
Release (3.22)
A simple single-sample gene signature scoring method that uses rank-based statistics to analyze the sample's gene expression profile. It scores the expression activities of gene sets at a single-sample level.
Author:
Dharmesh D. Bhuva [aut]
ORCID: 0000-0002-6398-9157
, Ruqian Lyu [aut, ctb], Momeneh Foroutan [aut, ctb]
ORCID: 0000-0002-1440-0457
, Malvika Kharbanda [aut, cre]
ORCID: 0000-0001-9726-3023
Maintainer:
Malvika Kharbanda
Citation (from within R, enter
citation("singscore")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("singscore")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("singscore")
Single sample scoring
HTML
R Script
Reference Manual
PDF
NEWS
Text
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
GeneExpression
GeneSetEnrichment
Software
Version
1.30.0
In Bioconductor since
BioC 3.7 (R-3.5) (8 years)
License
GPL-3
Depends
R (>= 3.6)
Imports
methods, stats, graphics,
ggplot2
, grDevices,
ggrepel
GSEABase
plotly
tidyr
plyr
magrittr
reshape
edgeR
RColorBrewer
Biobase
BiocParallel
SummarizedExperiment
matrixStats
reshape2
S4Vectors
System Requirements
URL
Bug Reports
See More
Suggests
pkgdown
BiocStyle
hexbin
knitr
rmarkdown
testthat
covr
Linking To
Enhances
Depends On Me
Imports Me
pathMED
TBSignatureProfiler
xCell2
clustermole
Suggests Me
mastR
vissE
msigdb
Links To Me
Build Report
Build Report
Package Archives
Follow
Installation
instructions to use this package in your R session.
Source Package
singscore_1.30.0.tar.gz
Windows Binary (x86_64)
singscore_1.30.0.zip
(64-bit only)
macOS Binary (x86_64)
singscore_1.30.0.tgz
macOS Binary (arm64)
singscore_1.30.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/singscore
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/singscore
Bioc Package Browser
Package Short Url
Package Downloads Report
Download Stats