Bioconductor - SubCellBarCode
Bioconductor 3.22
Software Packages
SubCellBarCode
SubCellBarCode
This is the
released
version of SubCellBarCode; for the devel version, see
SubCellBarCode
SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome
DOI:
10.18129/B9.bioc.SubCellBarCode
Bioconductor version:
Release (3.22)
Mass-Spectrometry based spatial proteomics have enabled the proteome-wide mapping of protein subcellular localization (Orre et al. 2019, Molecular Cell). SubCellBarCode R package robustly classifies proteins into corresponding subcellular localization.
Author:
Taner Arslan
Maintainer:
Taner Arslan
Citation (from within R, enter
citation("SubCellBarCode")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SubCellBarCode")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SubCellBarCode")
SubCellBarCode R Markdown vignettes
HTML
R Script
Reference Manual
PDF
NEWS
Text
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
Classification
MassSpectrometry
Proteomics
Software
Version
1.26.0
In Bioconductor since
BioC 3.9 (R-3.6) (7 years)
License
GPL-2
Depends
R (>= 3.6)
Imports
Rtsne
scatterplot3d
caret
e1071
ggplot2
gridExtra
networkD3
ggrepel
, graphics, stats,
org.Hs.eg.db
AnnotationDbi
System Requirements
URL
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Suggests
knitr
rmarkdown
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Imports Me
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Build Report
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Installation
instructions to use this package in your R session.
Source Package
SubCellBarCode_1.26.0.tar.gz
Windows Binary (x86_64)
SubCellBarCode_1.26.0.zip
macOS Binary (x86_64)
SubCellBarCode_1.26.0.tgz
macOS Binary (arm64)
SubCellBarCode_1.26.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/SubCellBarCode
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/SubCellBarCode
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