Bioconductor - tracktables
Bioconductor 3.22
Software Packages
tracktables
tracktables
This is the
released
version of tracktables; for the devel version, see
tracktables
Build IGV tracks and HTML reports
DOI:
10.18129/B9.bioc.tracktables
Bioconductor version:
Release (3.22)
Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.
Author:
Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang
Maintainer:
Tom Carroll
Citation (from within R, enter
citation("tracktables")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tracktables")
For older versions of R, please refer to the appropriate
Bioconductor release
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tracktables")
Creating IGV HTML reports with tracktables
PDF
R Script
Reference Manual
PDF
NEWS
Text
Need some help? Ask on the Bioconductor Support site!
Details
biocViews
ReportWriting
Sequencing
Software
Version
1.44.0
In Bioconductor since
BioC 3.0 (R-3.1) (11.5 years)
License
GPL (>= 3)
Depends
R (>= 3.5.0)
Imports
IRanges
GenomicRanges
XVector
Rsamtools
XML
tractor.base
stringr
RColorBrewer
, methods
System Requirements
URL
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Suggests
knitr
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Build Report
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Installation
instructions to use this package in your R session.
Source Package
tracktables_1.44.0.tar.gz
Windows Binary (x86_64)
tracktables_1.44.0.zip
(64-bit only)
macOS Binary (x86_64)
tracktables_1.44.0.tgz
macOS Binary (arm64)
tracktables_1.44.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/tracktables
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/tracktables
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