Microbial Genomics | Microbiology Society
Skip to content
1887
Tools
Add to my favourites
Create publication alert
Recommend to library
Share
Share
Tools
Add to my favourites
Create publication alert
Recommend to library
Microbial Genomics
Navigate this publication
About
Open issue
Previous issues
Editorial Board
Submit
Microbial Genomics
pioneers all areas of genome research spanning the breadth of microbial life including viruses, bacteria, archaea and microbial eukaryotes. We welcome articles showing novel insights, new applications, or innovative approaches using genomic data. Content ranges from comparative and functional genomics of model organisms to population-scale evolution, epidemiology and microbiome studies, and real-world genomics applications with clinical, veterinary or environmental relevance.
See full journal scope
For everything you need to know when preparing a submission check out our new
submission checklist
Browse these key collections:
Microbial Genomics of Eukaryotes
Genomics, Epidemiology and Evolution of Campylobacter, Helicobacter and Related Organisms
Establishing whole genome sequencing at the core of epidemiological surveillance
Microbial Genomics of Sexually Transmitted Infections
Status
Active
Articles from the latest issue
Latest Articles Rss Feed
Emergence of outbreak-driving high-risk
Pseudomonas aeruginosa
lineages in Taiwan: phylogenomic insights into ST292 and the ST235* sublineage
Chih-Ming Chen
Hui-Ling Tang
Se-Chin Ke
Yi-Pei Lin
Bo-Han Chen
Ru-Hsiou Teng
Chien-Shun Chiou
Min-Chi Lu
and
Yi-Chyi Lai
Genome-based source attribution using a One Health
Escherichia coli
isolate collection from 2013 to 2023 in Scotland
Antonia Chalka
Louise Crozier
Adriana Vallejo-Trujillo
Alison Low
Sean McAteer
Vesa Qarkaxhija
Kate Templeton
Sue C. Tongue
Judith Evans
Geoff Foster
Catriona Webster
Thomas Evans
Charis A. Marwick
Ahmed Raza
Benjamin J. Parcell
Matthew T. G. Holden
Tom McNeilly
Stephen Fitzgerald
Mairi Mitchell
Nuno Silva
Emily Robertshaw-McFarlane8
Scott Hamilton
Beth Wells
Clare Hamilton
Eleanor Watson
David Finlay
Julie Bolland
John Redshaw
David Walker
Jane Heywood
Charlotte King
Craig Baker-Austin
Athina Papadopoulou
Andy Powell
Genever Morgan
Gavin K. Paterson
Jacqui McElhiney
and
David L. Gally
Screen for signatures of positive selection in the core genome of
Staphylococcus epidermidis
Callum O. Rimmer
and
Jonathan C. Thomas
Harnessing gastrointestinal microbial co-association networks to predict feed efficiency and methane emissions across beef and dairy cattle
Pamela A. Alexandre
Yuliaxis Ramayo-Caldas
Milka Popova
Ioanna-Theoni Vourlaki
Gilles Renand
Aurélie Vinet
Diego P. Morgavi
and
Antonio Reverter
Reducing mapping reference and lineage bias in
Mycobacterium tuberculosis
Arturo Torres Ortiz
Xavier Didelot
and
Louis Grandjean
Evolution of genomic architecture of the plant-pathogenic fungus
Alternaria
revealed by comparative analyses of 12 chromosome-level assemblies
Jeremy R. Dettman
Natalie E. Kim
and
Kasia Dadej
Public and patient involvement: exploring public partnership in pathogen whole-genome sequencing research and its data visualisation
Suzanne Rotheram
Hannah Trivett
Jane Whitehurst
Caitlin Collins
Jake Carson
Sophie Staniszeweska
and
Xavier Didelot
Host–anellovirus interactions in an island ecosystem: non-human primates and rodents in Madagascar harbour diverse, rich anellovirus populations
Elise N. Paietta
Rachel A. Johnston
Santatriniaina F. Randrianarisoa
Camille M.M. DeSisto
Simona Kraberger
Darren Martin
Tahina T. Razanamahenina
Antsa Ramboninarimalala
Jean-Baptiste Velontsara
Toussaint G. Raherinirina
Victor Rasendrinirina
Laurent Raveloson
Yanting Luo
Nina L. Finley
Eric Baitchman
Anne D. Yoder
and
Arvind Varsani
Genomic and statistical models to characterize
Streptococcus pneumoniae
transmission patterns in Malawi
Rory Cave
James Chirombo
Uri Obolski
Sophie Belman
Akuzike Kalizang'oma
Thandie S. Mwalukomo
Arox Kamng’ona
Comfort Brown
Jacquline Msefula
Farouck Bonomali
Roseline Nyirenda
Todd D. Swarthout
Brenda Kwambana-Adams
Neil French
and
Robert S. Heyderman
Comparative genomic and resistance characterization of ST2 and ST164 carbapenem-resistant
Acinetobacter baumannii
from hospital environments and clinical specimens
Xiao Wang
Tongsheng Xu
Yue Zhang
Ye Qiu
Yanru Liang
Jun Feng
Yuanping Wang
Bing Zhao
and
Lili Ren
More
Less
Most read this month
Article
content/journal/mgen
Journal
10
false
en
Most cited
Most Cited RSS feed
Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification
Oliver Schwengers
Lukas Jelonek
Marius Alfred Dieckmann
Sebastian Beyvers
Jochen Blom
and
Alexander Goesmann
MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies
James Robertson
and
John H. E. Nash
ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
Alfred Ferrer Florensa
Rolf Sommer Kaas
Philip Thomas Lanken Conradsen Clausen
Derya Aytan-Aktug
and
Frank M. Aarestrup
SNP-sites
: rapid efficient extraction of SNPs from multi-FASTA alignments
Andrew J. Page
Ben Taylor
Aidan J. Delaney
Jorge Soares
Torsten Seemann
Jacqueline A. Keane
and
Simon R. Harris
Completing bacterial genome assemblies with multiplex MinION sequencing
Ryan R. Wick
Louise M. Judd
Claire L. Gorrie
and
Kathryn E. Holt
Emergence, molecular mechanisms and global spread of carbapenem-resistant
Acinetobacter baumannii
Mohammad Hamidian
and
Steven J. Nigro
ClermonTyping: an easy-to-use and accurate
in silico
method for
Escherichia
genus strain phylotyping
Johann Beghain
Antoine Bridier-Nahmias
Hervé Le Nagard
Erick Denamur
and
Olivier Clermont
On the limits of 16S rRNA gene-based metagenome prediction and functional profiling
Monica Steffi Matchado
Malte Rühlemann
Sandra Reitmeier
Tim Kacprowski
Fabian Frost
Dirk Haller
Jan Baumbach
and
Markus List
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
Silvia Argimón
Khalil Abudahab
Richard J. E. Goater
Artemij Fedosejev
Jyothish Bhai
Corinna Glasner
Edward J. Feil
Matthew T. G. Holden
Corin A. Yeats
Hajo Grundmann
Brian G. Spratt
and
David M. Aanensen
chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
Mickael Silva
Miguel P. Machado
Diogo N. Silva
Mirko Rossi
Jacob Moran-Gilad
Sergio Santos
Mario Ramirez
and
João André Carriço
More
Less
Tools
Add to my favourites
Create publication alert
Recommend to library
Share
Share
Tools
Add to my favourites
Create publication alert
Recommend to library
Access key
Subscribed content
Open Access content
Free Trial content
First article published in
Microbiology Outlooks
Discover the
new commentary
by Dr Damien F. Meyer, connecting within-host genomics and evolutionary theory, reframing virulence not as a fixed trait, but context-dependent strategy.
Microbiology Horizons
: the new interdisciplinary journal
Find out more about our newest title,
Microbiology Horizons
, bringing together insights on new technologies and solutions in microbiology to address global challenges.
From Our Blog
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An error occurred
Approval was partially successful, following selected items could not be processed due to error
Microbiology Society:
BROWSE_VIEW_LIST